PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1207720.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20381.5 Da    PI: 8.2045
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1207720.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.21.8e-121159350
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                       i+ + nr vtf kR++ ++ K  E+ +LC++ ++ +++  s+ k+  ++
  Pd.00g1207720.m01 11 ISHEPNRRVTFKKRKASLFRKLTEITTLCGIIACAVVYDpSDSKMDVWP 59
                       88999**************************999877751456776666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MGKNKIKHEL ISHEPNRRVT FKKRKASLFR KLTEITTLCG IIACAVVYDP SDSKMDVWPS  60
PQEAFYVLEN FKKLPEQRRG QFMMDQKAFL KKNISRLNGQ LERARFKNQA LDAELLLIEY  120
LEGKNLSDSS RLGSLLALED QLAKKISFIT NRIEFMEVLE PNEVDAEINS DEMGDQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.28e-29M-type_MADS family protein