PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1215980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 285aa MW: 32344.3 Da PI: 5.484

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1215980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.6e-14	14	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+d+vk +G g+W + +r+ g ++R +k+c++rw++yl Pd.00g1215980.m01 14 KGAWTALEDQILIDYVKDHGEGRWGKLSRETGeptltlrLKRGGKSCRLRWLNYL 68 79***************************************************97 PP
2	Myb_DNA-binding	45.3	2.1e-14	78	117	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 te+++l+++++k+lG++ W++Ia +++ gRt++++k++w+++ Pd.00g1215980.m01 78 TEDEDLIIRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNSV 117 799************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MGRSYRCDKD GLSKGAWTAL EDQILIDYVK DHGEGRWGKL SRETGEPTLT LRLKRGGKSC 60 RLRWLNYLRP EIKRGNITED EDLIIRLHKL LGNRWALIAG RLPGRTDNEI KNYWNSVLRE 120 KAQESHSERS RNEWKTTKDT EKAVPSLKMD SHFIQNGLTP TSCINNEQLG TTNTLAEPFT 180 SGVEATNMEV KSDPSDGFLP ITRENDMTWN FIRDLNAGEL GISEFLHTDF SKLCELNTTI 240 FDCTSGCRNR SLMSTSTAEA PLNLQEWLND WAADDNCLLE AAFGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	4e-50	MYB family protein