PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1216000.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 248aa    MW: 28103.4 Da    PI: 6.2859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1216000.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT++Ed+ll+ +++ +G g W+++++  g++R++k+c++rw++yl
  Pd.00g1216000.m01 14 RGPWTAQEDKLLAGYIRAHGEGKWSSVSKQAGLKRCGKSCRLRWLNYL 61
                       89********************************************97 PP
2Myb_DNA-binding52.61.1e-1667111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Pd.00g1216000.m01  67 RGNITQDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTN 111
                        7999******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRRPCCSKE GVKRGPWTAQ EDKLLAGYIR AHGEGKWSSV SKQAGLKRCG KSCRLRWLNY  60
LRPNIKRGNI TQDEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT NLCKEPPPPP  120
NNFVSCRPSK EASSDPQQQS KAEVNLSNVP KYNNQNAESE CSEGSLSSLP TTREEEDYSS  180
RDLWMNFYTR EMSLSQFLDI DFSNLSNLFA EVIVGGYSST KAMHDDDVEA DFGAQLAAFT  240
DLADEWIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-60MYB family protein