PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1218210.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27809.4 Da    PI: 5.1538
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1218210.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.5e-28958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       k ien++nrqvt+skRrng+lKKA+ELSvLCd++va+i+fs++g+l  +s
  Pd.00g1218210.m01  9 KMIENTTNRQVTYSKRRNGLLKKAYELSVLCDVDVALIMFSPSGRLSLFS 58
                       68*******************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRVKLQIKM IENTTNRQVT YSKRRNGLLK KAYELSVLCD VDVALIMFSP SGRLSLFSGN  60
KSIEEILARY VNLPGHERGG RIFEGDLSEA NTLHEAEYRE QILEETLKHL HMRKQILEEY  120
DSSATVVQVH APPATTNVDE FVTASPQNIL VDWLPQRDPQ VQILNFLNAN GLLPLRGEAQ  180
SRLEVIAAPQ SSTLLHGINL EDQMNPGRGS GLDGENNNTT LQRPELGQVI DVNLSPWNEF  240
YQTSTSFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-39MIKC_MADS family protein