PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1221260.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 214aa MW: 24226.4 Da PI: 8.8297

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1221260.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.3	2.7e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ Pd.00g1221260.m01 9 KRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	79.1	1.1e-26	69	133	36	100
K-box 36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 h++G+dL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+lqe+n+ L kk++e Pd.00g1221260.m01 69 SHFMGQDLQSLSLKELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKALQEQNNLLAKKVKE 133 69************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAQEISVLCD AEVALIVFST KGKLFEYSTD 60 SCMERILESH FMGQDLQSLS LKELQNLEQQ LDSALKHIRS RKNQVMYESI SELQKKDKAL 120 QEQNNLLAKK VKEKEKALAP QAQSWEQQVQ NQGLDCSSTL LPEALQSLNF GSGSNYQGIR 180 SDGSGGDHED ENETPTANRP NTLLPPWMLR HLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	7e-71	MIKC_MADS family protein