PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1223180.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 211aa MW: 23084.9 Da PI: 8.0403

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1223180.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.4	2.2e-07	8	32	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Pd.00g1223180.m01 8 GEKDCPCYMRTLSCTYGMKCRFNHP 32 7789********************9 PP
2	zf-CCCH	22.1	2.6e-07	139	165	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g1223180.m01 139 PGQPVCLYFSRAGDCKHKSNCKYHHPK 165 57899********************96 PP
3	zf-CCCH	24.2	5.8e-08	186	210	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C +++++G+C+ G CkF+H+ Pd.00g1223180.m01 186 GQNICARYSAYGICNSGLACKFNHP 210 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MGLPIRPGEK DCPCYMRTLS CTYGMKCRFN HPDPTPAGES DPPSGNGNGG PASLQGASSA 60 TAARWYAPGS LNNAPLYEPI MIPPSQEFPS QNTEWNGYQA PERSMPAPPP YVMNHSVTET 120 NTYEQYPQQK QVQEFPERPG QPVCLYFSRA GDCKHKSNCK YHHPKNQTAV PTSCALSDKG 180 LPLRPGQNIC ARYSAYGICN SGLACKFNHP S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	5e-63	C3H family protein