PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1223210.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1418aa MW: 158210 Da PI: 9.0205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1223210.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.0003	1327	1349	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H Pd.00g1223210.m01 1327 CPvkGCGKKFFSHKYLVQHRRVH 1349 9999*****************99 PP
2	zf-C2H2	11.9	0.00069	1385	1411	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H Pd.00g1223210.m01 1385 YVCAepGCGQTFRFVSDFSRHKRKtgH 1411 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1418 aa Download sequence
MSASGLAAEP NQEVFSWLKT LPVAPEYHPT WAEFQDPIAY IFKIEKEASK YGICKIVPPV 60 PPSPKKTAIA NLNRSLAARA GPWGAPGTKS QPTFTTRQQQ IGFCPRKPRP VNRPVWRSGE 120 YYTFQQFEAK AKSFEKTYLR KCNKKGGLSP LDIETLYWKA TVDKPFSVEY ANDMPGSAFV 180 PLSARKSSTS RDAGDNVTLG ETAWNMRGVS RSKGSLLRFM KEEIPGVTSP MVYIAMLFSW 240 FAWHVEDHDL HSLNYLHMGA GKTWYGVPRE AAVAFEEVVR VQGYAGEINP LVTFSTLGQK 300 TTVMSPEVFI SSGIPCCRLV QNAGEFVVTF PRAYHTGFSH GFNCGEAANI ATPEWLRVAK 360 DAAIRRASIN YPPMVSHFQL LYDLSLALCS RMPARICAEP RSSRLKDKKK GEGEAVVKEL 420 FVQNVIQNND LLHVLGKGSS IVLLPQSSSD LSFCSKLRVG SHLRVNPGFA NGLYDQREEM 480 KSSGSDSDGL MIDRQQGIKQ VKGGYSVKGK LASLCENQRL FSCVTCGILS FACAAIIQPT 540 EAAARYLMSA DRSFFSDWVV GSGLAGEVFQ VANEDPITSK NDPCTGLVEN NAPAGLYDVP 600 VQSADYQIQR GDQSNKPVSN TEMQRDTSAL GLLALNYGNS SDSEEDQLAP DVPVCCDETN 660 TTNCSFESRY DYQSASPSPL RDSYGGTTEA HSPPSPGFDC GNELPLQSPD HYARDGRKIA 720 NFKDSSYQNF DFSADFKNNS ASTKTNGLVG TSMDPMKLSH SCSPDAHRPQ TTELSKVTLP 780 IESTNTAFPP GCDEDSSRMH VFCLEHAIEV EQQLRSIGGV HVFLLCHPDY PRIEDEAKLM 840 AEELGISYLW NETTFRDATE EDEKRIQSAL DSEEAIAGNG DWAVKLGINL FYSASLSRSH 900 LYSKQMAYNS VIYNAFGRSS PASSPTRTDV YGRRSGKQKK VVAGKWSFHA WAMPDEKLEG 960 QPESTRKTEN TLVTKKYARK RKMTAETGTT KKVKCLEKED AVSDYSVDDN SHQQQRRFPK 1020 SKPAEYIESG PTKKAKFVQT EFTLSDDSMQ DDSHQPDGRN FRCEQANYIE GNDVSDDSVG 1080 VESHQQHRRS AKSKQAKHME RDMVSDDSVE GSSRQQHGRV LRSKTAKGET DNFHKASSHR 1140 ERGSISKSKQ ARFIERDDAA VGETDNFLQQ HKRILRSKQT QQETLQKMRR ETPRQVKQGT 1200 APLVKQGTRT LRKQQTTQQM KQQTPRLRNN QSEQNFDLYA DEGAEGGPST RLRKRAPKPI 1260 KVSGTKPKEQ QQTARKKAKN VSAVKAQAGQ NDAKLREEEA EFSCDIDGCT MSLGSKQELA 1320 LHKRNICPVK GCGKKFFSHK YLVQHRRVHM DDRPLRCPWK GCKMTFKWAW ARTEHIRVHT 1380 GARPYVCAEP GCGQTFRFVS DFSRHKRKTG HSAKKSRG

Sequence ? help Back to Top

Protein Sequence Length: 1418 aa Download sequence

MSASGLAAEP NQEVFSWLKT LPVAPEYHPT WAEFQDPIAY IFKIEKEASK YGICKIVPPV  60
PPSPKKTAIA NLNRSLAARA GPWGAPGTKS QPTFTTRQQQ IGFCPRKPRP VNRPVWRSGE  120
YYTFQQFEAK AKSFEKTYLR KCNKKGGLSP LDIETLYWKA TVDKPFSVEY ANDMPGSAFV  180
PLSARKSSTS RDAGDNVTLG ETAWNMRGVS RSKGSLLRFM KEEIPGVTSP MVYIAMLFSW  240
FAWHVEDHDL HSLNYLHMGA GKTWYGVPRE AAVAFEEVVR VQGYAGEINP LVTFSTLGQK  300
TTVMSPEVFI SSGIPCCRLV QNAGEFVVTF PRAYHTGFSH GFNCGEAANI ATPEWLRVAK  360
DAAIRRASIN YPPMVSHFQL LYDLSLALCS RMPARICAEP RSSRLKDKKK GEGEAVVKEL  420
FVQNVIQNND LLHVLGKGSS IVLLPQSSSD LSFCSKLRVG SHLRVNPGFA NGLYDQREEM  480
KSSGSDSDGL MIDRQQGIKQ VKGGYSVKGK LASLCENQRL FSCVTCGILS FACAAIIQPT  540
EAAARYLMSA DRSFFSDWVV GSGLAGEVFQ VANEDPITSK NDPCTGLVEN NAPAGLYDVP  600
VQSADYQIQR GDQSNKPVSN TEMQRDTSAL GLLALNYGNS SDSEEDQLAP DVPVCCDETN  660
TTNCSFESRY DYQSASPSPL RDSYGGTTEA HSPPSPGFDC GNELPLQSPD HYARDGRKIA  720
NFKDSSYQNF DFSADFKNNS ASTKTNGLVG TSMDPMKLSH SCSPDAHRPQ TTELSKVTLP  780
IESTNTAFPP GCDEDSSRMH VFCLEHAIEV EQQLRSIGGV HVFLLCHPDY PRIEDEAKLM  840
AEELGISYLW NETTFRDATE EDEKRIQSAL DSEEAIAGNG DWAVKLGINL FYSASLSRSH  900
LYSKQMAYNS VIYNAFGRSS PASSPTRTDV YGRRSGKQKK VVAGKWSFHA WAMPDEKLEG  960
QPESTRKTEN TLVTKKYARK RKMTAETGTT KKVKCLEKED AVSDYSVDDN SHQQQRRFPK  1020
SKPAEYIESG PTKKAKFVQT EFTLSDDSMQ DDSHQPDGRN FRCEQANYIE GNDVSDDSVG  1080
VESHQQHRRS AKSKQAKHME RDMVSDDSVE GSSRQQHGRV LRSKTAKGET DNFHKASSHR  1140
ERGSISKSKQ ARFIERDDAA VGETDNFLQQ HKRILRSKQT QQETLQKMRR ETPRQVKQGT  1200
APLVKQGTRT LRKQQTTQQM KQQTPRLRNN QSEQNFDLYA DEGAEGGPST RLRKRAPKPI  1260
KVSGTKPKEQ QQTARKKAKN VSAVKAQAGQ NDAKLREEEA EFSCDIDGCT MSLGSKQELA  1320
LHKRNICPVK GCGKKFFSHK YLVQHRRVHM DDRPLRCPWK GCKMTFKWAW ARTEHIRVHT  1380
GARPYVCAEP GCGQTFRFVS DFSRHKRKTG HSAKKSRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein