PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1223230.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 470aa MW: 52522.3 Da PI: 6.8281

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1223230.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	9e-12	190	212	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tGtCk+G++CkF+H++ Pd.00g1223230.m01 190 DCSFYLKTGTCKFGSSCKFNHPR 212 5********************96 PP
2	zf-CCCH	25.9	1.7e-08	283	306	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f++r+ C +G +C+F+H+ Pd.00g1223230.m01 283 EKDCSFYMRNASCMFGTNCRFNHP 306 679********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MLPAARLLLP VSVSVLYVLY KYLRSGRATE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE 60 EIRKFDPAVL DEFRKFDPAL LDEFRKFDPA ALDEFRKFDP AALDVIRKLD PAIINQIHKL 120 CVKEKVEGKE EAERNCSGRE NENGNETQSE ESGGGGGENK NENGGEVEKK VVNEERSRRH 180 HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PRRRKTNKVS KVKMKEREGL AAEKPGLTES 240 KDYSGSGGCK YEKPCSFNPR REEPSVAPIL ECNFLGLPIR PEEKDCSFYM RNASCMFGTN 300 CRFNHPDPTA ARESDPPSGY GNGGSASLQG ALSSTAAPWS APRSLNDAPL YVPMVIPPSQ 360 GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPY 420 PPHAPFETMT RRLQMGLEVI LTLQVSRSLC DKFCAGFAIT KHMQSFVLLI

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MLPAARLLLP VSVSVLYVLY KYLRSGRATE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE  60
EIRKFDPAVL DEFRKFDPAL LDEFRKFDPA ALDEFRKFDP AALDVIRKLD PAIINQIHKL  120
CVKEKVEGKE EAERNCSGRE NENGNETQSE ESGGGGGENK NENGGEVEKK VVNEERSRRH  180
HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PRRRKTNKVS KVKMKEREGL AAEKPGLTES  240
KDYSGSGGCK YEKPCSFNPR REEPSVAPIL ECNFLGLPIR PEEKDCSFYM RNASCMFGTN  300
CRFNHPDPTA ARESDPPSGY GNGGSASLQG ALSSTAAPWS APRSLNDAPL YVPMVIPPSQ  360
GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPY  420
PPHAPFETMT RRLQMGLEVI LTLQVSRSLC DKFCAGFAIT KHMQSFVLLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	215	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-63	C3H family protein