PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1223960.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 544aa    MW: 59437.7 Da    PI: 5.6342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1223960.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS258.23e-793145441239
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv+lL++c+ea+  ++ +++++++a+l elasp+g+++ Rl+ay+teALa r++r +++++++ pp+e + +  +++  al+l+++vsPi+k
  Pd.00g1223960.m02 314 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPRGTTISRLTAYYTEALALRVTRLWPHVFQITPPREFD-RGDDDSGIALRLLNQVSPIPK 404
                        6899*****************************************************************8.4567777899*********** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        f h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fA +l++pfef++ v++
  Pd.00g1223960.m02 405 FLHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRANPPSHIRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVD 491
                        *********************************************************....***************************.7** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                        rled++l++L+vk++E++aVn+v+qlh++l + +  +   +++L l++s++P+++
  Pd.00g1223960.m02 492 RLEDVRLWMLHVKEQESVAVNCVFQLHKTLYDGTGGA--LRDFLGLIRSTNPTIF 544
                        ******************************6655444..489**********996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE AAAQLQACHF QLPAMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KTSSCSLKQS IRLPPLATSG PVTSAAQTVA FVEARKEVND QFWEKKRGKS  120
LKRFAEQGSV DDDESCVNRA KRKKGCFDNG KGDEGGDGLS LGQLGAGNFW FQPDFHVPRS  180
VQSITTGLDP PPQLPFSLTC SGDEERVCYV PAEAISQPLP LSNNPWLDSI VTEITDLGEK  240
DAETRRGLGR EASAAASSAS SDSQSLGLRL NESASEHEAG NGSRDPYIPH GGAGVEAEDD  300
DDDESEGEHQ GFELVSLLTA CVEAIGLKNI AAINHFIAKL GELASPRGTT ISRLTAYYTE  360
ALALRVTRLW PHVFQITPPR EFDRGDDDSG IALRLLNQVS PIPKFLHFTS NEILLRAFEG  420
KDRVHIIDFD IKQGLQWPSL FQSLASRANP PSHIRITGIG ESKQELNETG DRLAGFAGAL  480
NLPFEFHPVV DRLEDVRLWM LHVKEQESVA VNCVFQLHKT LYDGTGGALR DFLGLIRSTN  540
PTIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein