PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1225760.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 162aa    MW: 18182 Da    PI: 5.2698
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1225760.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC166.53.4e-522968102
              NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                        ++ie+a+dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+prd
  Pd.00g1225760.m01   2 QDIEQASDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRD 93 
                        579***************************************************************************************** PP

              NF-YC 100 elk 102
                        elk
  Pd.00g1225760.m01  94 ELK 96 
                        975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MQDIEQASDF KNHSLPLARI KKIMKADEDV RMISAEAPVI FAKACEIFIL ELTLRSWIHT  60
EENKRRTLQK NDIAAAISRT DVFDFLVDII PRDELKEEGL GVTKATIPVV GSPADIPYYY  120
VPQQHPVGAP GMIMGKPVDQ AAIYAAQQPR PPMAFMPWYS EG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16571RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.15e-77NF-YC family protein