PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1226560.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 486aa    MW: 52736.9 Da    PI: 8.1648
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1226560.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.18.4e-10133157226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        +++ C +++ t tCk+G+ CkF H+
  Pd.00g1226560.m01 133 GEKDCAHYMLTRTCKFGELCKFDHP 157
                        7889********************8 PP
2zf-CCCH28.42.9e-09184210127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++ C++f +t  Ck+G rCkF+H++
  Pd.00g1226560.m01 184 PGEPDCPYFIKTQRCKFGMRCKFNHPK 210
                        5789*********************96 PP
3zf-CCCH37.73.4e-12233257327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C f+++tG+Ck+G++CkF+H++
  Pd.00g1226560.m01 233 EPPCAFYLKTGQCKFGATCKFHHPK 257
                        79*********************96 PP
4zf-CCCH38.52e-12309334126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        ++++ C+f+++tG CkyG++C+++H+
  Pd.00g1226560.m01 309 PGEPDCPFYLKTGSCKYGATCRYNHP 334
                        5789*********************9 PP
5zf-CCCH37.44.3e-12393414526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+++++tG+C++G++Ck++H+
  Pd.00g1226560.m01 393 ECDYYMKTGECRFGEQCKYHHP 414
                        7********************8 PP
6zf-CCCH40.35.3e-13445470227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        + ++C ++++tGtCkyG++CkF H+p
  Pd.00g1226560.m01 445 GVAICVYYLKTGTCKYGATCKFDHPP 470
                        5789********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MSSHLYGYGA AQSAAAAAAA TAGLSSVYTS RALTDPTLRY LSGSDPFASA TDHHSRSSSM  60
YLATSHFMSQ SSWPAPDVEP SVPGVKRPSE ALYHQSFMGA YNTIGQEAWY SALAKRPRYE  120
SASNLPIYPQ RPGEKDCAHY MLTRTCKFGE LCKFDHPIWV PEGGIPDWKE VPLVAPSESL  180
PERPGEPDCP YFIKTQRCKF GMRCKFNHPK EKLAAAVASE NADVFALPER PSEPPCAFYL  240
KTGQCKFGAT CKFHHPKDIQ IQIPSAEQEN KIGETGTTIQ PEGTGFAVKL PVSFSPALLY  300
NSKELPVRPG EPDCPFYLKT GSCKYGATCR YNHPDRYAIN PPIGAISHSI VAPPAAGLNI  360
GVINPAASIY QTLAQPTVGG GQTVYPQRVG QIECDYYMKT GECRFGEQCK YHHPIDRSAV  420
ALSTTKPVQQ QNVKLTLAGL PRREGVAICV YYLKTGTCKY GATCKFDHPP PGEVMGMAAS  480
QGASGA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein