PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g123400.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 245aa    MW: 27989.6 Da    PI: 6.5247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g123400.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-1474124155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ +hn+ Er RR++iNs ++ Lr+llP +    + Kls   +  ++v+YI +Lq
  Pd.00g123400.m02  74 KKLNHNASERGRRQKINSLYSSLRSLLPAD----QMKLSIPNTISRVVKYIPELQ 124
                       6789*************************8....79****************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MLALSPPSFS TIGWPLEDPK SHDQNYFYRD SFTDQIAESF LHILPSQLPQ VEPARSTPST  60
TVSGEYSGVS TMVKKLNHNA SERGRRQKIN SLYSSLRSLL PADQMKLSIP NTISRVVKYI  120
PELQKQVEGL IRKREELLVR ISNQEDQELH EEKKMKSTAG SSLSAVSTYR LNDREVAIQI  180
STFKTHNNLL SEILLNLEEE GLQMLNASSF ESSGERVFYN LHLQVERSYR LECENLSEKL  240
MSFYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132156RKREELLVRISNQEDQELHEEKKMK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-58bHLH family protein