PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g123520.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 224aa MW: 25037.5 Da PI: 5.4963

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g123520.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.9	1.2e-12	7	47	1	40
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGas 40 +C aCk+lrrkC+++C++apyf++e+ + f ++h++F +s Pd.00g123520.m01 7 PCGACKFLRRKCVRGCIFAPYFCHEEgATYFSAIHEVFERS 47 7*********************997899******765 PP
2	DUF260	42.9	1.4e-13	48	92	56	100
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk++ Pd.00g123520.m01 48 LQSQTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLASLKDQ 92 56789***********************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MAGFGSPCGA CKFLRRKCVR GCIFAPYFCH EEGATYFSAI HEVFERSLQS QTISYEAQAR 60 LQDPIYGCVS HIFALQQQVV NLQAQLASLK DQAAQSFVNG YAVANPNEKF YGKLPSHTEA 120 AQSWFPEFEN SSNSMPQFNS THINNPGTTS YYENGIMNSN NSVNGSYENS VNIPEENVSY 180 GSFEEGTSHS MSSFGMQTNY NRQWGFQDAD ELQSVAFSYI HKHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	2e-39	LBD family protein