PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1235540.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CPP

Protein Properties

Length: 608aa MW: 65970.1 Da PI: 8.3359

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1235540.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.4	1.6e-14	137	175	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCk+s+Clk+YCeCfaag +C+ C+C++C+N+ + Pd.00g1235540.m01 137 KQKQCNCKNSRCLKLYCECFAAGIYCEG-CNCSNCHNNVD 175 89***********************9.******986 PP
2	TCR	50.1	5.6e-16	221	260	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+C+ks ClkkYCeCf+a+ Cse+CkC +CkN e Pd.00g1235540.m01 221 KHNKGCHCRKSGCLKKYCECFQANILCSENCKCMGCKNFE 260 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence
MEQSETVSQI APKKLARQLD FTTVCRASAN AALPEVQLQL QLQAPSQAQL SQNSPATSHV 60 HLQLQSPPPA PVAQSPKQLT PPPAIPQFLA RPSPAPAANS RIQHPVHKLS ISTSQASKQE 120 SPISRQRGDG KDGTPKKQKQ CNCKNSRCLK LYCECFAAGI YCEGCNCSNC HNNVDNEAAR 180 QEAVGLILER NPNAFRPKIA SSPQESRDGR EDAGEIQAPG KHNKGCHCRK SGCLKKYCEC 240 FQANILCSEN CKCMGCKNFE GSEERRALHH EDHNTVAYMQ QANAAISGAI GSSGYGTPLV 300 SRKRKSYELY FSTTNQTTHP IKQPQQENHL RPPMASSSLS SVPNCCTANA AVSRSSKSTY 360 RSPLADIIQS KNIKDLCSRL VVVSGAAEAL AGNRRRETID ESSANLSTQE GKECKKEHDI 420 QNSVHDDHLG VNEADRDESS YSGLNGGDVQ NSRPMSPVTL ALMCDEQDKM FMPAGLPNGV 480 GSSSPSMTQK STQEIGCTEV YAEQERLVLT GFRDFLNHLI TRGSIKETMC SPQAKRERVS 540 QKEPVQGGTA KPSPEPRWQK EAYSNGVAKS PVSANGKMLQ PVTTLHPVAT VTSGDNDLSL 600 KVGLPIEK

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence

MEQSETVSQI APKKLARQLD FTTVCRASAN AALPEVQLQL QLQAPSQAQL SQNSPATSHV  60
HLQLQSPPPA PVAQSPKQLT PPPAIPQFLA RPSPAPAANS RIQHPVHKLS ISTSQASKQE  120
SPISRQRGDG KDGTPKKQKQ CNCKNSRCLK LYCECFAAGI YCEGCNCSNC HNNVDNEAAR  180
QEAVGLILER NPNAFRPKIA SSPQESRDGR EDAGEIQAPG KHNKGCHCRK SGCLKKYCEC  240
FQANILCSEN CKCMGCKNFE GSEERRALHH EDHNTVAYMQ QANAAISGAI GSSGYGTPLV  300
SRKRKSYELY FSTTNQTTHP IKQPQQENHL RPPMASSSLS SVPNCCTANA AVSRSSKSTY  360
RSPLADIIQS KNIKDLCSRL VVVSGAAEAL AGNRRRETID ESSANLSTQE GKECKKEHDI  420
QNSVHDDHLG VNEADRDESS YSGLNGGDVQ NSRPMSPVTL ALMCDEQDKM FMPAGLPNGV  480
GSSSPSMTQK STQEIGCTEV YAEQERLVLT GFRDFLNHLI TRGSIKETMC SPQAKRERVS  540
QKEPVQGGTA KPSPEPRWQK EAYSNGVAKS PVSANGKMLQ PVTTLHPVAT VTSGDNDLSL  600
KVGLPIEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	306	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-127	CPP family protein