PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g123790.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18801.6 Da    PI: 9.1518
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g123790.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.8e-221057249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       ie +s r+vtfskRr g++KKA+EL+++C++eva+iifs  gk + +
  Pd.00g123790.m01 10 LIETESARHVTFSKRRSGLFKKASELCTMCAVEVAIIIFSIGGKAFSF 57
                      5999************************************99987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MGRKKTQMEL IETESARHVT FSKRRSGLFK KASELCTMCA VEVAIIIFSI GGKAFSFGHP  60
NVHSVFNRLR FSENPDASTS SNEAAGQDPI LHDLNKTHSD LIENVGLVKQ LGKNMRRAIM  120
EKPKPDWFYA PRESLSMEVL YEMKEALEYV QENVRRDKER LLAQA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-32M-type_MADS family protein