PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1238030.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 277aa    MW: 29045.2 Da    PI: 9.0847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1238030.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00032112134123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C+k F++   L  H  +H
  Pd.00g1238030.m01 112 YKCSVCNKAFPSYQALGGHKASH 134
                        9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MALQALNSPT TAGASPFRFQ ETASKINYVE PWTKRKRSKR PRLDSPSAEE EYLAICLIML  60
ARGGSGSTSA ATTATANTAT NSAASHHMIT QSPSNASHQE PSTSAQPAKL SYKCSVCNKA  120
FPSYQALGGH KASHRKGAAG SAAEGPSTSS NTTTSGTTTV TASGRTHECS ICHKSFPTGQ  180
ALGGHKRCHY EGGVGASTAT APATTTSAVT SSEGVGSTSH HAVSHGHRET FDLNMPALPE  240
FSRDLFFCGE DEVESPHPAK KPRILTIMKP KQEISQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-47C2H2 family protein