PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1242830.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 244aa MW: 28028 Da PI: 9.393

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1242830.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.3	1.5e-31	9	57	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl+e+ Pd.00g1242830.m01 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLHEF 57 79**********************************************9 PP
2	K-box	98.8	7.7e-33	80	170	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++a+s++qe++kLk+++e+L r+qR+llGedL++L++keLq+Le+qLe +l + R++K++l++eq+e+l+kke+ l + nk+Lr kle Pd.00g1242830.m01 80 STGREAQSWYQEVTKLKAKYESLLRTQRQLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTQLMIEQMEDLRKKERHLGDLNKQLRVKLE 170 566789*********************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLHEFGNL 60 CMTKTLERYQ HSCFNPEENS TGREAQSWYQ EVTKLKAKYE SLLRTQRQLL GEDLGPLNVK 120 ELQNLEKQLE GALAQARQRK TQLMIEQMED LRKKERHLGD LNKQLRVKLE TEGQNLKAIQ 180 NMWSSNAAAG SSSFSFHSSQ TNPMDCQPHE PVLQIGYHQY LPTEGPSISK TMACETNFIQ 240 GWVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-104	MIKC_MADS family protein