PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1242830.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27798.8 Da    PI: 9.393
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1242830.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-31957149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl+e+
  Pd.00g1242830.m02  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLHEF 57
                       79**********************************************9 PP
2K-box873.8e-2980168999
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         + ++a+s++qe++kLk+++e+L r+qR+llGedL++L++keLq+Le+qLe +l + R++K  l++eq+e+l+kke+ l + nk+Lr kle
  Pd.00g1242830.m02  80 STGREAQSWYQEVTKLKAKYESLLRTQRQLLGEDLGPLNVKELQNLEKQLEGALAQARQRK--LMIEQMEDLRKKERHLGDLNKQLRVKLE 168
                        566789**************************************************99887..9***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLHEFGNL  60
CMTKTLERYQ HSCFNPEENS TGREAQSWYQ EVTKLKAKYE SLLRTQRQLL GEDLGPLNVK  120
ELQNLEKQLE GALAQARQRK LMIEQMEDLR KKERHLGDLN KQLRVKLETE GQNLKAIQNM  180
WSSNAAAGSS SFSFHSSQTN PMDCQPHEPV LQIGYHQYLP TEGPSISKTM ACETNFIQGW  240
VL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-101MIKC_MADS family protein