PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1243140.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRF

Protein Properties

Length: 760aa MW: 82502 Da PI: 8.9872

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1243140.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	70	3e-22	428	473	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d epgrCrRtDGKkWRC ++v++++k+C+ H+hrgr+rsrk++e+s Pd.00g1243140.m02 428 DHEPGRCRRTDGKKWRCNKNVVPDQKYCQQHMHRGRQRSRKPVENS 473 679***************************************9985 PP
2	WRC	63	4.5e-20	640	681	2	43
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC+r+vl+ +k+C H+hrg +r+ k + Pd.00g1243140.m02 640 LEPGRCRRTDGKKWRCRRDVLPHQKYCGQHIHRGAKRQMKDF 681 59************************************9976 PP
3	QLQ	54.7	3.1e-19	361	395	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +Ta+Ql++L++Q+l+yK++aan+PvP +L+++++k Pd.00g1243140.m02 361 LTATQLHELEQQALIYKHFAANLPVPFHLVLPVWK 395 7********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence
MYYFPCSGVS GNINSGKTSF AQQMQMSLPC VKQTDVITCK VAVAWGAGKP LVIEEVNVNP 60 PQAMEMRIKV VCTSLCRSDI TAWESQDFGM SISKTEVNLR RLLAAAPQQQ NQSKLVHYVA 120 TLREQVEQLA EERTPEGLPR VSKAVLSDYS EKIEAIASKL AAPLPDIQAP KEPLARISVK 180 ANSSDTGDNQ IPPSPGLRRR FGLTSNSEDG TREILSVDSS APVKLDAAAQ AHIEKHRKLQ 240 EDLTDEMVGL ARQLKESSLM MNHSLQDTEK ILDSTEKAVE SSLASTGHAN TRATNIYSTT 300 SKTTCFTWLQ QFDLLVMTME EEGGGKVKLG LGIGVDCYGD DHNGTEEVVG KKKKKYGGGG 360 LTATQLHELE QQALIYKHFA ANLPVPFHLV LPVWKSVAAS FGSSNAAAIN RQYPSFVGFS 420 ATGFDYRDHE PGRCRRTDGK KWRCNKNVVP DQKYCQQHMH RGRQRSRKPV ENSEVASPSS 480 TKTPKNSEGE LGNSKTNLQI STPKGLQLMA QSYNYVSVSQ GTTMASSGYH ECKKNIRPVT 540 TTSIANIPAN RSASTNPAAV ATTTIAGPTT ATNSSTNENS LNIGVKYNSS NHADGNCMIR 600 GSSMNVVNVS PGLGFSPKSV LQALLGCNGL YFDNGSGVEL EPGRCRRTDG KKWRCRRDVL 660 PHQKYCGQHI HRGAKRQMKD FQPVAVPSSS AAAMNTARLS QATAICRKTN CAIPNTNLSI 720 SIPANPPLGR NDERSNSSRD SDTTLTDTSL TACDSSYVSS

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence

MYYFPCSGVS GNINSGKTSF AQQMQMSLPC VKQTDVITCK VAVAWGAGKP LVIEEVNVNP  60
PQAMEMRIKV VCTSLCRSDI TAWESQDFGM SISKTEVNLR RLLAAAPQQQ NQSKLVHYVA  120
TLREQVEQLA EERTPEGLPR VSKAVLSDYS EKIEAIASKL AAPLPDIQAP KEPLARISVK  180
ANSSDTGDNQ IPPSPGLRRR FGLTSNSEDG TREILSVDSS APVKLDAAAQ AHIEKHRKLQ  240
EDLTDEMVGL ARQLKESSLM MNHSLQDTEK ILDSTEKAVE SSLASTGHAN TRATNIYSTT  300
SKTTCFTWLQ QFDLLVMTME EEGGGKVKLG LGIGVDCYGD DHNGTEEVVG KKKKKYGGGG  360
LTATQLHELE QQALIYKHFA ANLPVPFHLV LPVWKSVAAS FGSSNAAAIN RQYPSFVGFS  420
ATGFDYRDHE PGRCRRTDGK KWRCNKNVVP DQKYCQQHMH RGRQRSRKPV ENSEVASPSS  480
TKTPKNSEGE LGNSKTNLQI STPKGLQLMA QSYNYVSVSQ GTTMASSGYH ECKKNIRPVT  540
TTSIANIPAN RSASTNPAAV ATTTIAGPTT ATNSSTNENS LNIGVKYNSS NHADGNCMIR  600
GSSMNVVNVS PGLGFSPKSV LQALLGCNGL YFDNGSGVEL EPGRCRRTDG KKWRCRRDVL  660
PHQKYCGQHI HRGAKRQMKD FQPVAVPSSS AAAMNTARLS QATAICRKTN CAIPNTNLSI  720
SIPANPPLGR NDERSNSSRD SDTTLTDTSL TACDSSYVSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-30	GRF family protein