PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1243280.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 206aa    MW: 23042.5 Da    PI: 7.7677
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1243280.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.66.6e-3661034100
             DUF260   4 aCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                        a k+lrrkC k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+v++i++lqqq+ +l+ael
  Pd.00g1243280.m01   6 ADKFLRRKCIKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCVSHIFTLQQQVVNLQAEL 97 
                        459******************9989******************************************************************* PP

             DUF260  95 allkee 100
                        a+++++
  Pd.00g1243280.m01  98 AYVQAR 103
                        **9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MEVFCADKFL RRKCIKGCIF APYFDSEQGT AHFAAVHKVF GASNASKLLL RIPPHKRLDA  60
VVTLCYEALA RVRDPVYGCV SHIFTLQQQV VNLQAELAYV QARLATLQRA PPQLECPPPP  120
RSLHYSSSLI NVTSSPCSEF VPTSNLLTHF DPLQTVPHTA EMTSLFNSLD QELIDGEDLQ  180
ALAREFVCRY LPGVRLNKPS TSHQNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-67LBD family protein