PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1248600.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 150aa    MW: 16007.2 Da    PI: 8.9299
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1248600.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.4e-082141526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C +far G+Ck G +C+F Hg
  Pd.00g1248600.m01 21 PCLYFAR-GYCKNGTSCRFLHG 41
                       8******.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MRLKMDVCSE DPNSAGFGWK PCLYFARGYC KNGTSCRFLH GGLGDSVVDG GGQMAVGSPS  60
KLEMIDQSCH EALLRSKLLS SNSKDLLLLL SSWPPENPQM LRRFRLLQRS STSARPNSQS  120
AVFSASAGFN GCAAVQSTKA GSGDARPCPS