PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1253760.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 472aa    MW: 53150 Da    PI: 7.6897
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1253760.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-06731127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +kt+lC  ++r G C   ++C+FaHg+
  Pd.00g1253760.m01  7 FKTKLCVLYQR-GRCAL-ESCSFAHGQ 31
                       69*********.*****.*******97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    
MVERKLFKTK LCVLYQRGRC ALESCSFAHG QAELRRFSGS FDGDGNANSP LSNASLIYEG  60
FNITVHYYVT HVIPCNGRRD SGGDDLRDKL ERRYSPRRRY SPERDARGRH VLREYSPSRS  120
LERENFEYSF GNSKRRKKQH LDGQSDISGS LRISNETEHE AKEANSRGVL EEQLKQLQSE  180
INMLDHRRSQ LGVDLEEKSQ EADSLTSKIK ELEAQLYKEK EDCKRISSKV KKFVKAHSRN  240
SRIQDQLKRS QVRLNKLGDQ LALDIYGNDV NEEDSSINIV SDGDGETTGF PVTPHNERLN  300
DASPSNIRLE AIRDYAKESK QSAHSTRGHL TTSSRPKKLS RWNIHPAQSN FDKKNEAVSN  360
AIGSPKQLAN EGKHDRRKTA SSSILSADML KISESAPVVP STSMAAHPVD TEVEIEPEYK  420
IEMVGKASGK IEEGAAYENV SFSLPLPPPP IPKNNYSQYE GDDEIIDVQG AD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-39C3H family protein