PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1254820.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 432aa    MW: 46964.3 Da    PI: 7.9338
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1254820.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.3e-124874127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C yG++C+F+H++
  Pd.00g1254820.m01 48 PGEPDCIYYLRTGLCGYGSNCRFNHPK 74
                       5789*********************96 PP
2zf-CCCH38.61.8e-1292116327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        ++ C +f++tGtCkyG++CkF+H++
  Pd.00g1254820.m01  92 QPDCGYFLKTGTCKYGSTCKFHHPR 116
                        789********************96 PP
3zf-CCCH38.12.5e-12139161527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         C++++rtG Ck+G+ CkF+H++
  Pd.00g1254820.m01 139 SCPYYMRTGSCKFGPACKFHHPQ 161
                        6********************97 PP
4zf-CCCH36.21e-11277302227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++Cr+f+ tGtCkyG  Ck++H++
  Pd.00g1254820.m01 277 DQPECRYFMSTGTCKYGIDCKYHHPK 302
                        689*********************96 PP
5zf-CCCH33.56.9e-11318344127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+++  +G+CkyG++C+F H++
  Pd.00g1254820.m01 318 PGQPPCSYYIMYGICKYGPTCRFDHPF 344
                        5899*********************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    
MPDTRQALRN AVPNQSDGNV EEAFWRLNIN DNQDGGGVAQ SNPYPDRPGE PDCIYYLRTG  60
LCGYGSNCRF NHPKYGSQGA QYNGELPERV GQPDCGYFLK TGTCKYGSTC KFHHPRDRRG  120
AGPVVFNILG LPMHQEEKSC PYYMRTGSCK FGPACKFHHP QPQSLGTVLP AFGAAGSTVL  180
PSSGLPYAGG LSAWSFPRAP YLSGPRLQSP HSYMPVVLPP QSIVPAHGWN TYVGNISPVT  240
STGILGSNLT YNSRTQGESA SNGQVHLSSS SLPHRPDQPE CRYFMSTGTC KYGIDCKYHH  300
PKERIAESTH PLGLPSRPGQ PPCSYYIMYG ICKYGPTCRF DHPFVEHSAG YNFGMNALPL  360
DSALISYPRS WSVAHGLETS PSISSKFPDG VKKPVNNKYE NSDTKTAEDS PEQAGSAPPS  420
PTSSEPVQDQ SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-116C3H family protein