PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1267360.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 250aa    MW: 27390.6 Da    PI: 9.1222
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1267360.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.67.6e-42132229198
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+a
  Pd.00g1267360.m01 132 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQA 223
                        7******************************************************************************************* PP

             DUF260  93 elallk 98 
                        el++++
  Pd.00g1267360.m01 224 ELNAVR 229
                        **9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MVVDNKYLSS KLVSKEEASM ANASCRVYYG EAAGAIPFMW ESQPGTPKHP SSQSSLPPLT  60
PPPSYSTTPP ISKRTHKITS KSKFLDTIFP RLREISDEIG KKIKRETDAS SDHRIGRRHM  120
LGPPGTLNTI TPCAACKLLR RRCAQECPFS PYFSPHEPQK FASVHKVFGA SNVSKMLMEV  180
PESQRADAAN SLVYEANVRL RDPVYGCMGA ISALQQQVQS LQAELNAVRG LVGIGLNHGV  240
IFACCDLVCL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.17e-74LBD family protein