PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1275280.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 229aa MW: 26005.2 Da PI: 5.3805

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1275280.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++q+G g+W++ ++ g+ R++k+c++rw +yl Pd.00g1275280.m01 14 KGPWTPEEDHVLVTYIQQYGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.7	4.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l Pd.00g1275280.m01 67 RGNFSREEEDAIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MVRAPCCEKM GLKKGPWTPE EDHVLVTYIQ QYGHGNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF SREEEDAIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQNQ 120 PTTSETRAHF FSTKTEQEPE PSEKSESLDF GPASPPQCTS TNLPEADESF WSEVLSAENS 180 DQMVDQFQAI GGVPRVGVSP ADNGFCLDMY DENSIDFWLN IFPGADEIP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKRLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	2e-76	MYB family protein