PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1280230.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 242aa MW: 26895.4 Da PI: 8.4908

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1280230.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.1e-06	90	109	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r n++ H+ Pd.00g1280230.m01 90 FSCPVCSKTFNRYNNMQMHM 109 89*****************9 PP
2	zf-C2H2	14.3	0.00012	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Pd.00g1280230.m01 175 FGCRKCGKPFAVRGDWRTHEKNC 197 56*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MQTPSTTTTT TDVGTSATSF LEADEDQDEE SIFLSLGPPG QVALHIGPPS SGSTINSSIG 60 NPNHNHIGAP IEGQYWIPSP AQILVGPTQF SCPVCSKTFN RYNNMQMHMW GHGSQYRKGP 120 ESLRGTKPAS SVLRLPCYCC AEGCKNNIEH PRSRPLKDFR TLQTHYKRKH GSKPFGCRKC 180 GKPFAVRGDW RTHEKNCGKL WFCICGSDFK HKRSLKDHVR AFGDGHAPYA IEYIELSLEL 240 ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-108	C2H2 family protein