PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1282790.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 197aa MW: 22520.6 Da PI: 9.099

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1282790.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20	1.8e-06	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H Pd.00g1282790.m01 55 YVCEICNQGFQRDQNLQMHRRRH 77 9*********************9 PP
2	zf-C2H2	16.9	1.8e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Pd.00g1282790.m01 132 WVCDKCSKGYAVQSDYKAHLKTC 154 58*******************98 PP
3	zf-C2H2	11.1	0.0012	162	179	5	22
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 dCg++Fsr +++ H+ Pd.00g1282790.m01 162 DCGRVFSRVESFIEHQDA 179 9**************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MLPNNSSSSV PSSEPFSCLE NGNTNKRKRR PAGTPDPDAE VVSLSPKTLL ESDRYVCEIC 60 NQGFQRDQNL QMHRRRHKVP WKLLKRETPV VKKRVFVCPE PSCLHHDPCH ALGDLVGIKK 120 HFRRKHSNHK QWVCDKCSKG YAVQSDYKAH LKTCGTRGHS CDCGRVFSRV ESFIEHQDAC 180 NMDRVGYMAE TETQRAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.1	1e-112	C2H2 family protein