PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1286620.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23210.2 Da    PI: 9.6166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1286620.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.2e-182468145
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                       k+i+n+s  qvtfskRr+g++ KA+ L  LC+aeva+++fs++g+
  Pd.00g1286620.m01 24 KKIQNTSSLQVTFSKRRTGLFRKASQLGALCGAEVAILVFSPHGR 68
                       689***************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MSDDSSSTVT QQKRTMGRKK IDIKKIQNTS SLQVTFSKRR TGLFRKASQL GALCGAEVAI  60
LVFSPHGRPF VFGHPSVDSV ISRLASTSTS AECMHASGDD EETQSSIVQS NPAHSSTTYQ  120
TESLRLRLRV GGGGSMGLVK EETQEVAEAW SGSCGFWWDQ PTEKMKLHEL KQFKTSLEDL  180
RAKVGMQLDE MARRKLAARD FLGVYRNGSC G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-36M-type_MADS family protein