PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1286830.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 292aa    MW: 31866.1 Da    PI: 10.2953
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1286830.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.82.4e-30105160258
          CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh hA+rRpRg+gGrF
  Pd.00g1286830.m01 105 GPIYVNAKQYHGIIRRRQSRAKAVMENRA-AALRKPYMHESRHLHAMRRPRGCGGRF 160
                        69***************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MTPLRAPRGG EDFSIDDCTS TGVENKLLKI HLLSGHPRDG QKSQAAISLQ SSPQKYHARF  60
ELGFSQPMIC AKYPYMDQCY GLFSTYGPQI SGRIMLPLNL TADEGPIYVN AKQYHGIIRR  120
RQSRAKAVME NRAAALRKPY MHESRHLHAM RRPRGCGGRF LNTKTMNNGK NGTEGTQVGD  180
GQLFRHSGSH SSELLQSESG TLNSSKETNG SSSNISGSEV TSVCSRRDLD CFSINHLSPS  240
VHSLSGMMDS ARAFGSRIAR PHLVAIKGKS FLAHVRIGSP AIPCNHPARS GG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.24e-50NF-YA family protein