PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1287400.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 438aa MW: 50809.4 Da PI: 7.8619

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1287400.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++Hi +H Pd.00g1287400.m02 56 YYCEYCGICRSKKSLITSHILSH 78 89*******************96 PP
2	zf-C2H2	19.8	2.1e-06	101	122	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pd.00g1287400.m02 101 TCQECGVTFRKPAHLKQHMQSH 122 6*******************99 PP
3	zf-C2H2	15.7	4.2e-05	160	184	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC+ s++rk++L+rH+ H Pd.00g1287400.m02 160 YICSvdDCHSSYRRKDHLNRHLLQH 184 89*******************9887 PP
4	zf-C2H2	13.5	0.00022	189	214	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n++rH + H Pd.00g1287400.m02 189 FKCPieNCNREFGFQGNMTRHVNElH 214 89*******************99888 PP
5	zf-C2H2	12.3	0.00053	229	253	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C k+F+ s L++H +H Pd.00g1287400.m02 229 HVCKeiGCRKVFRFASRLRKHEDSH 253 79*******************9888 PP
6	zf-C2H2	17.6	1.1e-05	320	344	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C ++F++ksnL +H + H Pd.00g1287400.m02 320 KCDykGCLRTFTTKSNLAKHVKAvH 344 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MKTLDSLHCP SEISGSQSPN AVACSLVGET FRVGALAMDK GQAEMEGPIF RDIRRYYCEY 60 CGICRSKKSL ITSHILSHHK DEMEMSNVDE DREVEQEKSN TCQECGVTFR KPAHLKQHMQ 120 SHSLEESTFM KYIRWIAWET SCEAPSSEPQ SRTVWFERPY ICSVDDCHSS YRRKDHLNRH 180 LLQHQGKLFK CPIENCNREF GFQGNMTRHV NELHSEDSPS TSGGAQKQHV CKEIGCRKVF 240 RFASRLRKHE DSHVKLDTVE AFCSEPGCMK HFTNEQCLRA HIHSCHQHTT CEICGTKQLR 300 NNIKRHLLTH EDKHSIERIK CDYKGCLRTF TTKSNLAKHV KAVHLEHKPF VCSFSGCGLR 360 FAYKHVRDNH EKTGCHVYTQ GDFEEADEQF RSRPRGGRKR ECPDIPMLVR KRVTPPNQLG 420 QECEYIPWLH SQEDNDEQ

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MKTLDSLHCP SEISGSQSPN AVACSLVGET FRVGALAMDK GQAEMEGPIF RDIRRYYCEY  60
CGICRSKKSL ITSHILSHHK DEMEMSNVDE DREVEQEKSN TCQECGVTFR KPAHLKQHMQ  120
SHSLEESTFM KYIRWIAWET SCEAPSSEPQ SRTVWFERPY ICSVDDCHSS YRRKDHLNRH  180
LLQHQGKLFK CPIENCNREF GFQGNMTRHV NELHSEDSPS TSGGAQKQHV CKEIGCRKVF  240
RFASRLRKHE DSHVKLDTVE AFCSEPGCMK HFTNEQCLRA HIHSCHQHTT CEICGTKQLR  300
NNIKRHLLTH EDKHSIERIK CDYKGCLRTF TTKSNLAKHV KAVHLEHKPF VCSFSGCGLR  360
FAYKHVRDNH EKTGCHVYTQ GDFEEADEQF RSRPRGGRKR ECPDIPMLVR KRVTPPNQLG  420
QECEYIPWLH SQEDNDEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-143	C2H2 family protein