PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1292250.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 394aa MW: 43302.1 Da PI: 5.0418

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1292250.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.2e-17	48	93	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Pd.00g1292250.m01 48 KGPWSPEEDAILSRLVSKFGARNWSLIARGID-GRSGKSCRLRWCNQ 93 79****************************.*********985 PP
2	Myb_DNA-binding	56.1	8.6e-18	100	144	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd+ ++ a++ +G++ W++Iar ++ gRt++ +k++w++ Pd.00g1292250.m01 100 RKPFTDEEDQMIIAAHAFHGNK-WAAIARLLP-GRTDNAIKNHWNST 144 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MEREMEAAYD AAAEVDAEDG GDSGEEATQA VAGGGGESHR KSGRDRVKGP WSPEEDAILS 60 RLVSKFGARN WSLIARGIDG RSGKSCRLRW CNQLDPSVKR KPFTDEEDQM IIAAHAFHGN 120 KWAAIARLLP GRTDNAIKNH WNSTLRRRCM DPDKIKLESG NTVEDVSLDK TKASSEETFS 180 YGDVNSSKSM EGREVSSLEH MDCQYEDKGS TEGQFSHEVK EQPTLCRPAA CISAFSVYNH 240 SDSQETGVSF PRLIPVQGPL VQVSKLDVNI SKLLDGVYGE RSIPDQCGHG CCCANGKNAQ 300 NSLLGPEFVD FSEPPSFPSF ELAAIATDIS NLAWIKSGLE NSSVRAMGDA ADRTVPHESQ 360 GQMGHFEESR MNNLFRFEER NDRLMGMKTN VLST

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MEREMEAAYD AAAEVDAEDG GDSGEEATQA VAGGGGESHR KSGRDRVKGP WSPEEDAILS  60
RLVSKFGARN WSLIARGIDG RSGKSCRLRW CNQLDPSVKR KPFTDEEDQM IIAAHAFHGN  120
KWAAIARLLP GRTDNAIKNH WNSTLRRRCM DPDKIKLESG NTVEDVSLDK TKASSEETFS  180
YGDVNSSKSM EGREVSSLEH MDCQYEDKGS TEGQFSHEVK EQPTLCRPAA CISAFSVYNH  240
SDSQETGVSF PRLIPVQGPL VQVSKLDVNI SKLLDGVYGE RSIPDQCGHG CCCANGKNAQ  300
NSLLGPEFVD FSEPPSFPSF ELAAIATDIS NLAWIKSGLE NSSVRAMGDA ADRTVPHESQ  360
GQMGHFEESR MNNLFRFEER NDRLMGMKTN VLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-109	MYB family protein