PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1294080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 374aa MW: 40048.6 Da PI: 9.8407

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1294080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Pd.00g1294080.m01 72 FICEICNKGFQRDQNLQLHRRGH 94 89*******************88 PP
2	zf-C2H2	13.2	0.00026	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pd.00g1294080.m01 148 WKCDKCSKRYAVQSDWKAHSKTC 170 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MSNLTSASGE AASVSSGNRN EIGTSFSQQF FAPTPSQTQP ALKKKRNLPG NPDPEAEVIA 60 LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVRK KVYVCPEASC 120 VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA EETTALLQKA AQMGATMSSK NSTATAAAAT SAGSSPQPMM 240 RSHQNNQGHV PDFGGHVSSF GNNTAAAATT GAGGASASRA SFELDAFGSM PTVLNNSKKD 300 TNNSNNPSSA HFNRSSASDE GGGHGEGLTR DFLGLRALSH SDILNIAGLG SCVTSAATAA 360 ASSSLDQTHK PWQG

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MSNLTSASGE AASVSSGNRN EIGTSFSQQF FAPTPSQTQP ALKKKRNLPG NPDPEAEVIA  60
LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRTSKEVRK KVYVCPEASC  120
VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA EETTALLQKA AQMGATMSSK NSTATAAAAT SAGSSPQPMM  240
RSHQNNQGHV PDFGGHVSSF GNNTAAAATT GAGGASASRA SFELDAFGSM PTVLNNSKKD  300
TNNSNNPSSA HFNRSSASDE GGGHGEGLTR DFLGLRALSH SDILNIAGLG SCVTSAATAA  360
ASSSLDQTHK PWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	111	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-115	C2H2 family protein