PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1294590.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 303aa MW: 34635.3 Da PI: 10.3436

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1294590.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.6	1e-15	29	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W+++ + +Liea e++ +l+rg+l++++Weev++++ +r+ +qCk++ + l+k+yk +k++ ++ + + +s +p+f+ l Pd.00g1294590.m02 29 CWSEDATFTLIEAWGERHLSLNRGNLRQKHWEEVADAVnashvtaDNPRSRRTDVQCKNRVDTLKKKYKIEKARVSDSNGDYTSPWPFFSLL 120 7***********************************99999966666789********************99999999***988 PP trihelix 86 e 86 + Pd.00g1294590.m02 121 D 121 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MDFVAGSPSP VTAPRPPSKT ASVPVREDCW SEDATFTLIE AWGERHLSLN RGNLRQKHWE 60 EVADAVNASH VTADNPRSRR TDVQCKNRVD TLKKKYKIEK ARVSDSNGDY TSPWPFFSLL 120 DSLIGSKFPK PSPPLPRRCS PSPPLPRRCS PSPPLPRRSP PSAPLQWTFP VARRSATVKR 180 PAPAFFPAPG DEPVEESEGS PSRSSVEGSR MRDRDREVGC VELAMAIERF AEIYERVEQR 240 KQRQMVELEK QRMQFAKDLE YHRMQLFMET TKHQLRKIKR AKRSSSSPDN YLEATRFDSH 300 RLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-69	Trihelix family protein