PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1295780.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NF-X1

Protein Properties

Length: 690aa MW: 77493.8 Da PI: 8.4961

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1295780.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.6	9.6e-07	224	245	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCpp...Cp 19 CG+H C++ C+ G+Cpp C+ Pd.00g1295780.m01 224 CGRHACKRRCCDGDCPPklrCK 245 *****************99998 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MPGADPTRPP DLVLHLRLFL RLPPHLYPEL GAPGLRFVRL TGFHAPSHFY SESGRGIPLE 60 LSQMVHCCSE ICHQGPCPPC PVRAVYRCQC GKREEERECC ERLDFRCEEP CEKVLGCGQH 120 KCSKGCHSED CGPCPFQGKR TCPCGKTVHE GLSCKASVPL CGATCSKMLS CGYHRCPERC 180 HRGQCIVTCR TVVIKSCRCG SLKKEVPCHQ DLTCERKCQR QRDCGRHACK RRCCDGDCPP 240 KLRCKNHKCP SPCHRGACAP CPVMVTIACL CGETHFEVPC GIEMDQKPPR CPKPCPITLL 300 CRHGKNRKPH KCHYGACPPC RVLCEEEYPC GHKCKLRCHG PRPPPNPEFT LKPKKKKSLH 360 QSECTPGSPC PPCPEHVWRS CVGQHIGVER MMVCSDKTLF SCENLCGNPL PCGNHFCTKT 420 CHPLKNQSLP SVQQARSEPC EKCHLPCGKE REPACSHPCP LSCHPGDCPP CKVLVKRSCH 480 CGSMVHVFEC IYYNSLSEKE QMAARSCGGP CHRKLPYCNH LCPELCHPGQ CSLPEKCSKK 540 VTVRCACQSL KKEWLCHDVQ AAYRNAGSDP KDISKNQFGH ALIPCNSNCK SKLKVIDSEL 600 QLRRPKTVEV KEPDTDKHGP KRKKRRERVQ EVTQISTLQK IVSNVKRFLL LVTLLLVLVA 660 VSYYGYKGLL WLNDWMNEVE EKRQGRYPRI

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MPGADPTRPP DLVLHLRLFL RLPPHLYPEL GAPGLRFVRL TGFHAPSHFY SESGRGIPLE  60
LSQMVHCCSE ICHQGPCPPC PVRAVYRCQC GKREEERECC ERLDFRCEEP CEKVLGCGQH  120
KCSKGCHSED CGPCPFQGKR TCPCGKTVHE GLSCKASVPL CGATCSKMLS CGYHRCPERC  180
HRGQCIVTCR TVVIKSCRCG SLKKEVPCHQ DLTCERKCQR QRDCGRHACK RRCCDGDCPP  240
KLRCKNHKCP SPCHRGACAP CPVMVTIACL CGETHFEVPC GIEMDQKPPR CPKPCPITLL  300
CRHGKNRKPH KCHYGACPPC RVLCEEEYPC GHKCKLRCHG PRPPPNPEFT LKPKKKKSLH  360
QSECTPGSPC PPCPEHVWRS CVGQHIGVER MMVCSDKTLF SCENLCGNPL PCGNHFCTKT  420
CHPLKNQSLP SVQQARSEPC EKCHLPCGKE REPACSHPCP LSCHPGDCPP CKVLVKRSCH  480
CGSMVHVFEC IYYNSLSEKE QMAARSCGGP CHRKLPYCNH LCPELCHPGQ CSLPEKCSKK  540
VTVRCACQSL KKEWLCHDVQ AAYRNAGSDP KDISKNQFGH ALIPCNSNCK SKLKVIDSEL  600
QLRRPKTVEV KEPDTDKHGP KRKKRRERVQ EVTQISTLQK IVSNVKRFLL LVTLLLVLVA  660
VSYYGYKGLL WLNDWMNEVE EKRQGRYPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	620	626	PKRKKRR
2	622	628	RKKRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein