PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1298610.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 459aa    MW: 52716.1 Da    PI: 10.3438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1298610.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07406425525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         C+++a+ G C yG++CkF+H
  Pd.00g1298610.m01 406 MCKYYAQ-GRCYYGNNCKFSH 425
                        6******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MLSIKRNSKT RIAKDIDLGS EADLDGQEVV LPGLDQKDEK SFEMVQKIIE ARQIEKLKVE  60
QCKLYLRKNG LRLTGNKDTL IQRIKEHLEI LNGGGEKKYP ASSFVLNCKG DACTSDVVMF  120
EQNVYEIFDI ASRSGRGPPC GTRIVAGRIV KESYGAAKQQ HTFTIEVLWS KGEKPLPPLH  180
PLLIKGRNLY RLKTLRQRWE DEGERQKVLM EKHTRGSLAR TAKEARVQEK DMRKMLKRNR  240
VSRKEEPKKN QSQFNSTSVL KTSVQPQQSG SLVNSANLHQ LVGISVHSGN TKVCAQQLGL  300
FTDILRDPSL KPATQIHQSG FVVYSQNPAT QPPVPKSGFF VDSRKVTIHP QLTKNTTMQD  360
RYFNQASQKL NESRNSNNTE RVYNKRQPLT SVNHFLPTSP QGQKQMCKYY AQGRCYYGNN  420
CKFSHAMRGN YNERREERWP HEQRNLCQQQ IFLWNEREL