PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1299720.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 302aa    MW: 34485.1 Da    PI: 7.8358
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1299720.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-182774148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg W++eEde+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
  Pd.00g1299720.m01 27 RGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 74
                       788*******************************************97 PP
2Myb_DNA-binding48.71.7e-1580122145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  Pd.00g1299720.m01  80 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 122
                        899*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MTELDLLWGD KPRVGPAYTE ALHKVKRGLW SPEEDEKLIN YITTYGHGCW SSVPKLAGLQ  60
RCGKSCRLRW INYLRPDLKR GSFSPQEAAL IIELHSILGN RWAQIAKHLP GRTDNEVKNF  120
WNSSIKKKLI PHEVIPALAS FSHDIHNPSG NSEESFFTLT TNPNVGPQQD QLFLPIPNPM  180
PQGFNFHGDH NNINLIKLDQ TNYGSNFVHH FPPPLQLPSN SSSYESSWSL GYQPHHQFDP  240
NQHLQNFSID EAAAHYNIGC HVTHLIHKTL THLPNYHVFH LLMGLILKIF SFYPVNWSAL  300
MP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.29e-72MYB family protein