PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1299860.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 490aa MW: 53409.5 Da PI: 9.0983

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1299860.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	92	114	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Pd.00g1299860.m01 92 FICEICNKGFQRDQNLQLHRRGH 114 89*******************88 PP
2	zf-C2H2	12.8	0.00036	168	190	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pd.00g1299860.m01 168 WKCDKCSKRYAVQSDWKAHSKTC 190 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MMKGLMFQQQ QQHSQLVDEN MSNLTSASGE AASVSSGNRN EIGTSFSQQY FAPPPSQTQP 60 ALKKKRNLPG NPDPEAEVIA LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL 120 KQRTSKEVRK KVYVCPEASC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ 180 SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARAITTG NNNPLLISPQ 240 QQQLQQPGSS SASHHHHMNL NQVQLAHQFQ DLHGFSLKKE QQSFTSLRPD LPPWLACPGP 300 PNNTSIDLSS SSSIFSTRLD QNFTQTHQDL SLHDHNSTAP NPNPNPNLGP TLPPFQPAPS 360 PHMSATALLQ KAAQMGATMS SKNSTASAAA ATSAGASFEL DAFGSMPTVL NNSKKDTNNS 420 NNPSSAHFNR SSASDEGGGH GEGLTRDFLG LRALSHSDIL NIAGLGSCVT SAATAAASSS 480 LDQTHKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MMKGLMFQQQ QQHSQLVDEN MSNLTSASGE AASVSSGNRN EIGTSFSQQY FAPPPSQTQP  60
ALKKKRNLPG NPDPEAEVIA LSPKTLMATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL  120
KQRTSKEVRK KVYVCPEASC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ  180
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARAITTG NNNPLLISPQ  240
QQQLQQPGSS SASHHHHMNL NQVQLAHQFQ DLHGFSLKKE QQSFTSLRPD LPPWLACPGP  300
PNNTSIDLSS SSSIFSTRLD QNFTQTHQDL SLHDHNSTAP NPNPNPNLGP TLPPFQPAPS  360
PHMSATALLQ KAAQMGATMS SKNSTASAAA ATSAGASFEL DAFGSMPTVL NNSKKDTNNS  420
NNPSSAHFNR SSASDEGGGH GEGLTRDFLG LRALSHSDIL NIAGLGSCVT SAATAAASSS  480
LDQTHKPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	131	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-115	C2H2 family protein