PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g1303890.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 818aa MW: 90975.5 Da PI: 5.6336

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g1303890.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	365	388	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+++ +H+ + H Pd.00g1303890.m02 365 FECHKCSMTFGEKDSYLQHLLSfH 388 89******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence
MNNRCCVSRL WNHLRRKINL MTVFITRPSR QIMKDLVVPK IDRSVFNESA GSRRQTYSRP 60 RRSQSDASTG HRRRVAGLHA TPKLSPVPPD DPERNENHAI IAHLKNFISQ DPKFDQINFE 120 ATHTASFPML LGPNHELRSG IVGFEGREDE GVKKRKRGRK PKVKVLSMEG EGYVGMEMVN 180 KNGAAVDVSG LANVEDPFGE ELRRRTVGLE TEEQLLGFMR ELGGQWGSRR KKRKIVDANE 240 FGDALPVGWK LLLGLKRKEG RAWIYCRRFI SPTGQQFLSC KEVSSFLHSF FGFNNARQPD 300 GRGGENLQEE CIMTTENHSD KDGGRRQSVN SSSALVVSTI SNEREKEVSL SGMENLAEVQ 360 IRDLFECHKC SMTFGEKDSY LQHLLSFHQR TTRRYRLGST VGDGVIIKDG KYECQFCHKV 420 FLERRRYNGH VGIHVRNYVR RVEESPGPTT VQKRIESPSG EGFPSRISKM DALIEIAQNS 480 ILETSTAGPN NESKCGPAAN SHQEMNIDSP LSEPDLEGSM IDRTASDQHD SEHTITDGSM 540 EEADDPMEVV DVKMDSGMNT TSIEKNGKPS ESSLEKDGLV FTSDELEKSG TNQDGASQCL 600 IHASSNDKII SEVVGNENLN FTSTLEHPNA VELSNNKNSE PAVEFGSSND HGPANDTLIE 660 PVRQANEENE IQSGISDSSM SLVQPLVCFP TSNAISDKGE QHVSSVGQRN NHETGFEELR 720 LDEIEPLKYG FAGGQESLTM QEVPMDLTNN AEMERAFGSS VQFEQEEVML SMAASHQLTC 780 VWCGVEFNHE AADSEIQADS VGFMCPACKA KISGPLNV

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence

MNNRCCVSRL WNHLRRKINL MTVFITRPSR QIMKDLVVPK IDRSVFNESA GSRRQTYSRP  60
RRSQSDASTG HRRRVAGLHA TPKLSPVPPD DPERNENHAI IAHLKNFISQ DPKFDQINFE  120
ATHTASFPML LGPNHELRSG IVGFEGREDE GVKKRKRGRK PKVKVLSMEG EGYVGMEMVN  180
KNGAAVDVSG LANVEDPFGE ELRRRTVGLE TEEQLLGFMR ELGGQWGSRR KKRKIVDANE  240
FGDALPVGWK LLLGLKRKEG RAWIYCRRFI SPTGQQFLSC KEVSSFLHSF FGFNNARQPD  300
GRGGENLQEE CIMTTENHSD KDGGRRQSVN SSSALVVSTI SNEREKEVSL SGMENLAEVQ  360
IRDLFECHKC SMTFGEKDSY LQHLLSFHQR TTRRYRLGST VGDGVIIKDG KYECQFCHKV  420
FLERRRYNGH VGIHVRNYVR RVEESPGPTT VQKRIESPSG EGFPSRISKM DALIEIAQNS  480
ILETSTAGPN NESKCGPAAN SHQEMNIDSP LSEPDLEGSM IDRTASDQHD SEHTITDGSM  540
EEADDPMEVV DVKMDSGMNT TSIEKNGKPS ESSLEKDGLV FTSDELEKSG TNQDGASQCL  600
IHASSNDKII SEVVGNENLN FTSTLEHPNA VELSNNKNSE PAVEFGSSND HGPANDTLIE  660
PVRQANEENE IQSGISDSSM SLVQPLVCFP TSNAISDKGE QHVSSVGQRN NHETGFEELR  720
LDEIEPLKYG FAGGQESLTM QEVPMDLTNN AEMERAFGSS VQFEQEEVML SMAASHQLTC  780
VWCGVEFNHE AADSEIQADS VGFMCPACKA KISGPLNV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	258	RRKKRKIVDANEFGDALPVGWKLLLGLKRK
2	230	259	RRKKRKIVDANEFGDALPVGWKLLLGLKRK
3	231	260	RRKKRKIVDANEFGDALPVGWKLLLGLKRK