PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g1306780.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 131aa    MW: 14270.2 Da    PI: 9.8399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g1306780.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07326226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k++lC+ffa  G C  G+ C F+H+
  Pd.00g1306780.m01  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                       99****6666.*************5 PP
2zf-CCCH24.54.6e-083454526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C f+++ G C +G+rC++ H+
  Pd.00g1306780.m01 34 ICTFYQK-GACAFGSRCRYEHV 54
                       7******.***********997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MSKRVLCKFF AHGACLKGEH CEFSHDWKAT PNNICTFYQK GACAFGSRCR YEHVKASRAQ  60
SSGSSSSTNS RQSLAVDSLS MAHPSRTSSS GVALAPGILS ELSASSSRWQ LVQLVALMPH  120
WVLNSWRFAA S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.17e-27C3H family protein