PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g133740.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 508aa MW: 54670 Da PI: 10.1003

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g133740.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Pd.00g133740.m01 74 FICEVCNKGFQREQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	13.4	0.00024	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Pd.00g133740.m01 150 WKCEKCSKRYAVQSDWKAHSKTC 172 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPNPEAEV 60 IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP KRKVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD 180 CGTLFSRRDS FITHRAFCDA LAQESARHPP SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ 240 ISSLQQDHSQ SGTAADILRL GGAGAAGPAR TGQFDHLLGS SFRPAAQSSA SFFLTAPDHA 300 TNNNLLISPD HFNTNVNGTT TAAGGSEATA LLQKAAQMGS TNSSNNTTAS LLRSFGSSSS 360 ATAKSDRPGA LVPSSLGGMF GSDQHDQSHL QDLMNSFANT GGSSIFANAS FGGYDAAAAN 420 RAINMEETKL QQQNSRGVSN IGGADRLTRD FLGVGQVKAM LQLQLRRQAN LLEEVGIFSE 480 NNMSWKKYRD ERGSSTFPRT IIYASSSG

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MAASSSSVAP LFGIREEDQN QQMKQQHSST PPTSSTAAAA APPQKKKRNQ PGTPNPEAEV  60
IALSPKTLMA TNRFICEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP KRKVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD  180
CGTLFSRRDS FITHRAFCDA LAQESARHPP SLSTIGSSLY GGSLSNTGLG LSHQVVGPPQ  240
ISSLQQDHSQ SGTAADILRL GGAGAAGPAR TGQFDHLLGS SFRPAAQSSA SFFLTAPDHA  300
TNNNLLISPD HFNTNVNGTT TAAGGSEATA LLQKAAQMGS TNSSNNTTAS LLRSFGSSSS  360
ATAKSDRPGA LVPSSLGGMF GSDQHDQSHL QDLMNSFANT GGSSIFANAS FGGYDAAAAN  420
RAINMEETKL QQQNSRGVSN IGGADRLTRD FLGVGQVKAM LQLQLRRQAN LLEEVGIFSE  480
NNMSWKKYRD ERGSSTFPRT IIYASSSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-115	C2H2 family protein