PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g135800.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 333aa MW: 37273.8 Da PI: 6.9527

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g135800.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	43.4	5.7e-14	250	275	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++ G+C+yG+ C+FaHg Pd.00g135800.m01 250 FKTELCNKWQEAGECPYGEHCQFAHG 275 79***********************8 PP
2	zf-CCCH	19.1	2.4e-06	288	312	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H Pd.00g135800.m01 288 YKTEVCRMVLA-GvACPYGHRCHFRH 312 9********.66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MHNDTASSTA NGGLAISSPF KSQPRSDDAV FSSLYSAIFD RKPSLARYNE SEPDASSNHP 60 HRQLYHSLLV QDHQEMVNRH SRTLKQLHEA SEEADALRLE NIHLRALNLE LNKHLSLLIH 120 ASVQKQFVSP CSVETTPFGI VNRLHAMSID GKRAEEDESD ESPTSVIESE GADAENIDVE 180 RFTLPKSISV RSDGYVKVAQ PGTSTAAGTR AATRPRTANT FNASQKVYVP TGGMKEQEPL 240 ELEVYNQGMF KTELCNKWQE AGECPYGEHC QFAHGIEELR PVIRYPRYKT EVCRMVLAGV 300 ACPYGHRCHF RHALTENEKF MGPNKPRAMK LAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	4e-75	C3H family protein