PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g136510.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 230aa    MW: 24912 Da    PI: 6.8617
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g136510.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.85.9e-2741081100
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C ++p +     p++q++++ +++k++G++ +l+l++a  ++ r+++++sl+yeA+ r+ +P  G+vg+++++++  +
  Pd.00g136510.m01   4 SCNGCRVLRKGCSEKCSIRPSIewiksPDSQANATLFLAKFYGRAGLLNLINAGAQHLRPAIFKSLLYEACGRIVNPTFGSVGLMSSGSWAQC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelallkee 100
                       q++++++l++++
  Pd.00g136510.m01  97 QAAVDAVLAGSP 108
                       ****99988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MRMSCNGCRV LRKGCSEKCS IRPSIEWIKS PDSQANATLF LAKFYGRAGL LNLINAGAQH  60
LRPAIFKSLL YEACGRIVNP TFGSVGLMSS GSWAQCQAAV DAVLAGSPIA GLDADALNLV  120
PSPPNKSGDI RHVFRDSNSG ASCNKVTTRN RFKRSMNKSK THPGSLTDFA TGSHMAQFCN  180
FPDPDDLCPS PEGNGAGGDY DGEVGWRYDL DVEEVEEEQL QVYNCQKEQV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-69LBD family protein