PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g142320.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 397aa MW: 45613.7 Da PI: 9.028

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g142320.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	154	177	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H Pd.00g142320.m01 154 YICGVCGRKCKSNLDLKKHFKQlH 177 89*****************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MNLLCNPIHT FPYKPFPLIS LHSSRSPFFN SKRSFQPQPI TTLSIRTRSY VAIKAAANSE 60 IDMVQNKQGI YTPKQKKVVI LWDLDNKPPR GPPYQAAMAL KQVAQRFGEV VESSAYANRH 120 AFDHLPQWVI EQRRERKQLD ILERKGLVVP SEPYICGVCG RKCKSNLDLK KHFKQLHERE 180 RQKKLNRMRS LKRKKRQRFK ERFVSGNHKY NEAARSLIKP KVGYGLASEL RRAGVFVRTV 240 EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLR KAREANLGTV VVGDFDRALG 300 RHADVWVPWI GVENGDVSEK DLVPKRRRIF DGGSELDNVV DELVVTRSLS SGMRISAFSE 360 GELEEGDWVE DDGDSEDSED YLLDSEDEGT DEEDGFF

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MNLLCNPIHT FPYKPFPLIS LHSSRSPFFN SKRSFQPQPI TTLSIRTRSY VAIKAAANSE  60
IDMVQNKQGI YTPKQKKVVI LWDLDNKPPR GPPYQAAMAL KQVAQRFGEV VESSAYANRH  120
AFDHLPQWVI EQRRERKQLD ILERKGLVVP SEPYICGVCG RKCKSNLDLK KHFKQLHERE  180
RQKKLNRMRS LKRKKRQRFK ERFVSGNHKY NEAARSLIKP KVGYGLASEL RRAGVFVRTV  240
EDKPQAADWA LKRQMQHSMS RGIDWLFLVS DDSDFSEMLR KAREANLGTV VVGDFDRALG  300
RHADVWVPWI GVENGDVSEK DLVPKRRRIF DGGSELDNVV DELVVTRSLS SGMRISAFSE  360
GELEEGDWVE DDGDSEDSED YLLDSEDEGT DEEDGFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	174	RRERKQLDILERKGLVVPSEPYICGVCGRKCKSNLDLKKHFK
2	192	221	KRKKRQRFKERFVSGNHKYNEAARSLIKPK
3	193	222	KRKKRQRFKERFVSGNHKYNEAARSLIKPK
4	325	329	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-165	C2H2 family protein