PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g144110.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 174aa    MW: 19987.7 Da    PI: 9.9126
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g144110.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-27959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien +nrqv +skRrng++KKA+EL vLCda v++i++ss+gk++ey+s
  Pd.00g144110.m01  9 KRIENATNRQVIYSKRRNGLFKKAHELTVLCDATVSLIMVSSSGKIHEYIS 59
                      79***********************************************86 PP
2K-box61.82.6e-2172141270
             K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                       qk++g++ +++++e +q++l+kLk+ +++L++++R++ lGe+L+++s+ eL+ +eq++e ++  iR++K+
  Pd.00g144110.m01  72 QKTKGVDIWSSHYEAMQEHLKKLKEVNRSLRKQIRQRvLGECLNDMSFDELRGVEQEMEGAVDVIRKRKD 141
                       6788999***************************98538******************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MARGKIQIKR IENATNRQVI YSKRRNGLFK KAHELTVLCD ATVSLIMVSS SGKIHEYISP  60
STTTKQFFDQ FQKTKGVDIW SSHYEAMQEH LKKLKEVNRS LRKQIRQRVL GECLNDMSFD  120
ELRGVEQEME GAVDVIRKRK DARDDPHYRL VENGGGDYES AFGYSSNGGP RIFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-69MIKC_MADS family protein