PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g144600.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 436aa MW: 46866.9 Da PI: 9.7963

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g144600.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	196	218	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ F+ ++L++H+ H Pd.00g144600.m01 196 VCSQCGEIFPKMDSLEHHQAIrH 218 8******************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MALLTFVPEA TEPKNKKKAP PPSKRRQKQS SSSKKQQNPP SSSSSSWDQI KNLLTCKQIE 60 GSRVHDPSKN HNIVNGGAGA AAAGYSKLGS SCSSICSFRD VVHGNTRVVH RADNSPESSS 120 LGQETGLLGR KHVTRSSTRS SSSRSNATGT GAAYNTTSAS SSSSRGMQFR KLSGCYECHM 180 IVDPSRYPIP RSSVCVCSQC GEIFPKMDSL EHHQAIRHAV SELGVQDSGR NIVEIIFKSS 240 WQKKDIPICK IERILKVHNT QRTIQRFEDC RDVVKNRALG TTRKNPRCAA DGNELLRFHC 300 ASISCTLGAR GSSSLCGSVP GCGVCTIIRH GFQGKTGGEG GKGVRTTASS GRAHDSLSCT 360 DGRRAMLVCR VIAGRVRRIA DDAPTEEDAL SSLSAPGSYD SVAGFAGIYS NLEELVVYNP 420 RAILPCFVVI YKALES

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MALLTFVPEA TEPKNKKKAP PPSKRRQKQS SSSKKQQNPP SSSSSSWDQI KNLLTCKQIE  60
GSRVHDPSKN HNIVNGGAGA AAAGYSKLGS SCSSICSFRD VVHGNTRVVH RADNSPESSS  120
LGQETGLLGR KHVTRSSTRS SSSRSNATGT GAAYNTTSAS SSSSRGMQFR KLSGCYECHM  180
IVDPSRYPIP RSSVCVCSQC GEIFPKMDSL EHHQAIRHAV SELGVQDSGR NIVEIIFKSS  240
WQKKDIPICK IERILKVHNT QRTIQRFEDC RDVVKNRALG TTRKNPRCAA DGNELLRFHC  300
ASISCTLGAR GSSSLCGSVP GCGVCTIIRH GFQGKTGGEG GKGVRTTASS GRAHDSLSCT  360
DGRRAMLVCR VIAGRVRRIA DDAPTEEDAL SSLSAPGSYD SVAGFAGIYS NLEELVVYNP  420
RAILPCFVVI YKALES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-164	C2H2 family protein