PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g166230.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 17780.7 Da    PI: 10.4496
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g166230.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.68e-2985134251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstg+ly+y+s
  Pd.00g166230.m01  85 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGRLYDYAS 134
                       8***********************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MPAFPRSHVH LRAPALSCLH VPFQSLSRNL NYPPILSRWS TGLSLIRPTK CRPQKASSMV  60
ITGEIEEGRL FEEEVMGRGK IVIRRIDNST SRQVTFSKRR NGLLKKAKEL SILCDAEVGL  120
IIFSSTGRLY DYASTSMGSE ASSGLVMGLF LTTYINLASF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14210.12e-35MIKC_MADS family protein