PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g179720.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25643.9 Da    PI: 4.5531
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g179720.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF24.63.2e-082667950
                      HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       ++  +kR  +   KA+ELS LCd+ v +  ++ +gk+  ++
  Pd.00g179720.m01 26 HKTAMAKRGSTRNEKASELSKLCDIAVYMTAVGADGKIDSWP 67
                      45778999999999************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MALPKSNPKI SVSTKTKRVS NAMKPHKTAM AKRGSTRNEK ASELSKLCDI AVYMTAVGAD  60
GKIDSWPENQ QDLKSVVRKY KNLRRGLKDQ VEKGSFSAEI VEDREIGDLG FQDNCLGSKV  120
PYNGFEFDHY SVETNDYLSL VLGDAHNDLQ PQSSNYMEGL KIDGHDVVAA MPSMDAADDD  180
IKLLLSDYDF DMMQDDVQFC VDDLIDMLLQ DPQQQPHSEF KCPILDLNV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-09M-type_MADS family protein