PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g179780.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 118aa MW: 13681.7 Da PI: 9.4302

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g179780.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ Pd.00g179780.m01 44 FMCRKCAKTFAVKGDWRTHEKNC 66 89*****************9987 PP
2	zf-C2H2	10.7	0.0017	73	90	5	22
TTTEEESSHHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHirt 22 Cg F++k +Lk Hir+ Pd.00g179780.m01 73 TCGSDFKHKRSLKDHIRS 90 799*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence
MLRLPCYCCA QGCKNNINHP RAKPLKDFRT LQTHYKRKHG AKPFMCRKCA KTFAVKGDWR 60 THEKNCGKLW YCTCGSDFKH KRSLKDHIRS FGKGHSPHPS LDGFHEDEKE CITGSEDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-70	C2H2 family protein