PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g180540.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 394aa    MW: 44523.9 Da    PI: 3.9719
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g180540.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.54.2e-091354950
                      HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +++  +kR  ++  KA  LS LCd+ v +i ++ +gk+ +++
  Pd.00g180540.m01 13 QKTAMAKRGSTLKNKAGRLSKLCDIAVYIIAVGADGKINDWP 54
                      568899***********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MKMKRVSDAM KPQKTAMAKR GSTLKNKAGR LSKLCDIAVY IIAVGADGKI NDWPENQQDL  60
KSVLLKYKNL KRGFKDRIEK GLFSVEKGFL EIVDDRESRD LGIQDNCLGA NFMDLYKNIM  120
EPDAADQQQL SSLNLNLNLH PTDLVVPTPK PNLIGEINLN LEPGDLVIPT PKPNLLGQIN  180
LNLDPGDVVV PTPKPKLIGQ FQQQRDYLSS IHEPTVDAND YLSLVLGNDD HNDIGLMEDY  240
LQLYDLELPE EPQEQLQPQS PSVPSVEISD DDMKLLLSDC EIGLMEDDMQ FCDNLDDYEP  300
TVDTIYDFLS WVLGDEDQND NSAVEDDVQP QSTNHITDDE HDDFRLLLTD CEIGLMQEDL  360
QFCDNDLSDF LAPLENMLLQ DPQHQPHSEL NLNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-08M-type_MADS family protein