PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g188660.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 137aa    MW: 15703.9 Da    PI: 6.6131
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g188660.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000265678123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C++Cg + s ks+ ++Hi +H
  Pd.00g188660.m01 56 YYCEYCGICRSKKSLITSHILSH 78
                      89*******************96 PP
2zf-C2H2224.3e-07101122223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       +C+ Cg +F+ + +Lk+H+++H
  Pd.00g188660.m01 101 TCQECGVTFRKPAHLKQHMQSH 122
                       6*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    
MKTLDSLHCP SEISGSQIPN AVACSLVGET FRVGALAMDK GQAEMEGPIF RDIRRYYCEY  60
CGICRSKKSL ITSHILSHHK DEMEMSNVDE DREVEQEKSN TCQECGVTFR KPAHLKQHMQ  120
SHSLEESTYM KYIRWIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.28e-27C2H2 family protein